Basic Information | |
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Taxon OID | 3300027720 Open in IMG/M |
Scaffold ID | Ga0209617_10003858 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6994 |
Total Scaffold Genes | 17 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (11.76%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, Canada | |||||||
Coordinates | Lat. (o) | 41.77 | Long. (o) | -81.73 | Alt. (m) | Depth (m) | 5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F002259 | Metagenome / Metatranscriptome | 577 | Y |
F003659 | Metagenome / Metatranscriptome | 474 | Y |
F006697 | Metagenome / Metatranscriptome | 366 | Y |
F011474 | Metagenome / Metatranscriptome | 290 | N |
F026828 | Metagenome | 196 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209617_1000385811 | F011474 | GGA | MKTKIDHLNHFDIVVKEELASCGSADEMLDVLAKNYDLRKPLGGLTKAAFTIGLRTAVGMLRPEVKADANYKTKELKDTRFPHLKIFS |
Ga0209617_1000385815 | F006697 | N/A | MANQVQKLSYVDSKLGVSLPGQQTTRVIYDSVNAVAGQGFFQFFTNFAGKTEFQTNLTTNKLDSAESMVIKSIQLIGNFAGATPATLANHLNLNITVGNQVVVKDFDPSFNATNRGLSFDRLHSAFANGDNLEFRLLTEIVIPPQVNFKAELAISDAVNIALNDDITIIFKGYGRIFSAGNSF |
Ga0209617_1000385816 | F002259 | N/A | MGMSAQDKMLNVASRLGLTSLKDMQGTTRMVYDSQTTAALTHTFFKGAAQRAFPLTNVGANGNQFQVNEALLVEKIGFFVPTAADGISYNGLNSALGNFSVKFDLVIGNKTVIKDVTCEVGGQQAFYTDGTVASAVIDLEGVGILIPPQVEYYVVAKQFLANSRVASSQRLGCYLFGTGALLNFNTTI |
Ga0209617_100038584 | F026828 | N/A | MTEELITNAIAFLAGWILKRPDFVQKIISKIFTKK |
Ga0209617_100038587 | F003659 | N/A | MTAADVLGRYLIAREDVPVYDLPNGTRIGTINKGNSTAEVYSYVQRPGQVWWMFDYTIPGQTPGAYYVLQKDGRFTLSAAAGNVLVSPSSLPSVDVFPAGGIKKYALFGALGLLALFILK |
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