Scaffold Ga0209617_10001723

Overview

Basic Information

• Taxon OID: 3300027720
• Scaffold ID: Ga0209617_10001723
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10233
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (12.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000710	Metagenome / Metatranscriptome	925	Y
F002287	Metagenome / Metatranscriptome	574	Y
F003659	Metagenome / Metatranscriptome	474	Y
F005775	Metagenome	390	N
F051646	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209617_1000172311	F005775	AGGA	MAKQRPIYTKAQHQIVTPAFVEKKIQLHKTIKWNTKDGRELFLMASGSVTRYVPKSEHNSQAPMGFFNLQMGHYNKISIHTRDFAQLADVFEQITLFLKSNAGKLDQVVTTELDTYTTHHLKNLLNTNEK
Ga0209617_1000172319	F003659	N/A	MTAADVLGRYLIAKKDVPIYDAPFGTRIGTIKKGNSTPEVYSYLVRQGQVFWVFDYTIPGQTPGAYYALQSPDAFSLSSVPGNVAIAPNVLPSVDVFPAGSIKKYAIFGALGLLALLILK
Ga0209617_100017232	F051646	N/A	MSWQIPTQIEQDIIAGKAKYQTFQTGNGGQNILQVPPNSFVVIFGYDFSPAGGGIQQKTEVTNLRELHDASLRFFETQQISFYTGTDFFPFIHHVNSEISAFYSDDSANEEYVLTIDNSPIARQVYITSVQDVTITHGLILNAIPATTGTIPVTNRTPGFLSYGGSPQLIQAQTNYGPALTPQQFMQPSPKDFQDFGLGLLPGNPTDQAFATPDITNGLLEANAHLLAIGGDTFVEAAATNYYLCMHYAIYSKTIPEQRG
Ga0209617_100017233	F000710	N/A	MANGINMISYRQGIRNKGFQITVPTTGASQTLSLSGLAKAFEGIILSQTTSAAPSILVNGLQLRITLTINNDVVIDDVVAHELGASVAAGVTTGFPAFIPFPRALTGQDTILLRATNSSGASQLLNVTVYYKNEI
Ga0209617_100017234	F002287	N/A	MNQITKLGYVDNKLGAPSDGQQTTRILFNTIEAPGTTSQLSFFKNFQGLTNGQTNLTNNKLDSMESMVIKTIMLTQFSTDGTLQNFGGGVQQTVSIIVGNQTVVKNLPIHFNYGSTGQSYDRLHTNGGVSSDQIASATPTVQLNMPCEIRLLTDIVIPPQVSFEVRVESTNYPYGDGAVVCALSGYGKIFSAGNTF