Scaffold Ga0209617

Basic Information
Taxon OID	3300027720 Open in IMG/M
Scaffold ID	Ga0209617_10001502 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027720 Open in IMG/M

Scaffold ID

Ga0209617_10001502 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10927
Total Scaffold Genes	34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (50.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

10927

Total Scaffold Genes

34 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

17 (50.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location Name	Lake Erie, Canada
Coordinates	Lat. (^o)	41.77	Long. (^o)	-81.73	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, Canada

Coordinates

Lat. (^o)

41.77

Long. (^o)

-81.73

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016774	Metagenome / Metatranscriptome	244	Y
F048101	Metagenome / Metatranscriptome	148	N
F049419	Metagenome / Metatranscriptome	146	Y
F062446	Metagenome / Metatranscriptome	130	Y
F071966	Metagenome	121	Y
F082109	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209617_1000150213	F082109	N/A	MWTPIEIFLLTFILNHSPMKSERLSVKEVIQNREAQLLVEGVGLRNDF
Ga0209617_1000150214	F062446	AGGA	MTFKPIKIIAFMLVVLAWILMTFFFVGCANTSYHTIPTAMSEDAQDYPTKYNMMDSQDGRRNPNAQVNIFGATY
Ga0209617_1000150218	F048101	AGGAG	MKKKIKTKKFKNLKEFLETCSEDEREYIYDLYNNASVADLIDLLFEHLPADDTIQEIQEYREEMEWDNNEAKKSNKPKRKCDCDFVGCQGC
Ga0209617_1000150225	F071966	GAGG	MLSLLGSHIDYKGYIFKPFYLLLGVLYFIVLLSLLGSLYIILYIRDTLEIVLNNIEKNRKKYYSL
Ga0209617_100015024	F049419	N/A	MKLPKLNILDLVTTYIFFGLVYGTIITLTWNYLFEQTFNIHLSILQGFGIHLIARILFGNTNTNYISNFYSQKTPDLDKIDDYLKEIQADLDKEADEVEKQYEDLNKKD
Ga0209617_100015029	F016774	GAGG	MPLKKSKIEFLTDHLASLNHWRDQLLALEKSYYSKDPEKERTCRNMLNKYLDDVLEHNKNIKEKSKKKV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209617_10001502

Overview

Ecosystem & Geography

Associated Families

Sequences