Scaffold Ga0209617

Basic Information
Taxon OID	3300027720 Open in IMG/M
Scaffold ID	Ga0209617_10001145 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027720 Open in IMG/M

Scaffold ID

Ga0209617_10001145 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12312
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (39.13%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

12312

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (39.13%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location Name	Lake Erie, Canada
Coordinates	Lat. (^o)	41.77	Long. (^o)	-81.73	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, Canada

Coordinates

Lat. (^o)

41.77

Long. (^o)

-81.73

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024058	Metagenome / Metatranscriptome	207	N
F024954	Metagenome / Metatranscriptome	203	N
F032162	Metagenome / Metatranscriptome	180	N
F080893	Metagenome / Metatranscriptome	114	Y
F086551	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209617_1000114512	F032162	AGG	MKQNLKISYQTFGENNAYLLEGSIKQINHFFNSIYNWEGTNGKLHDMGNGKAFYFYAHPDDVMKALTKVALHSLVNKINAKGRKGGLLDLAKAKAQSIIDEMTQTCFLWGATSSEGYSLGTISAEKPSDYCGAVSNGRN
Ga0209617_1000114515	F024058	N/A	MTHRMINWNFQRKQMRENMRKNMDTSESIITNSNNTPTYFGEIYLYEGTLVKVSYKTSANSAVVTFLEGKDKDKVGTINLNNAKLVKENK
Ga0209617_1000114517	F086551	N/A	MKMKERKNKMNIQINPELYENKNIYRYGHEKLLVKLFPSTIGWKTKTATAEILEGEDKGKWTTIYMRKGMYPVDAQ
Ga0209617_1000114518	F024954	N/A	MIDYKYMKNTIETLVVGKYYQVENHIAICEFFNSSSNRKCLRKVSGVGTLLAFYDEVEEVEMTPELLKECEERKNGIMNFIGSFNASSKYKGD
Ga0209617_100011456	F080893	AGGAG	MNHKINVTNTNILEGEKANPQNCAIARAIKSKMKKKITSVSVLPSHVTLKIDNKMFVAEMPKAGADFIKRFDRGIAVNSFKLNLKFRKGFQLAA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209617_10001145

Overview

Ecosystem & Geography

Associated Families

Sequences