Scaffold Ga0209617_10001056

Overview

Basic Information

• Taxon OID: 3300027720
• Scaffold ID: Ga0209617_10001056
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12726
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (54.55%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006138	Metagenome / Metatranscriptome	380	Y
F008741	Metagenome	328	Y
F009142	Metagenome	322	Y
F014487	Metagenome / Metatranscriptome	262	Y
F019290	Metagenome	230	Y
F023059	Metagenome	211	Y
F090073	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209617_1000105611	F006138	GAGG	MPAVTVGNAGLVFGLSTETIGLVQSFSETRNVEKNEIRNASGDVSGIGYYNPTTAYSLSVAITGANTSLTVGGAFASLANATTVGTCRIDSIALNKTNTGFVTLDISATGYPNVS
Ga0209617_1000105612	F019290	N/A	MEGSSYWGTTNIKVASAVAAFGGTLRQADPVTHIVREDGSKQITFWFNSGGSGSIAKKEMEAKWSEMTSDQEAPIRYVRAALENRETLLGLVKRAEPIQIIKRGGQTLLVPVNAKPELKRAILRAM
Ga0209617_1000105613	F090073	AGG	MNNILDDELNGSFVKPSRDYKGEAIADYTEGSRLLMLQCKEPQDSSVYFVWAFLYIHILIAKNRKEAIKLAWNRDEFRDKLLGWIEDKTEEDRAVATNIVSEMIEEASRAKVSVVLSGNIASGND
Ga0209617_100010562	F008741	GAG	MSAKTIKYSQRLGDVLRCLPAAKHLADQGHEVFFDCFAQYNDVFELTSYVKAGHRQGDVIDLEVWPNKYEAYRKSKRSWTDFVYSHPEIKDADKTNIVLDKLDEKPAEGLPETYNLVAPFGLSQGYYRNPLDLITRARGIMGAENFYVLCPPDIKIQGLNTYTAPSVEQMAKAIRGATDFWAINSSPIILASATRKDKQTGFFPQKDEWGTDNIFSFEGMITMD
Ga0209617_1000105621	F023059	GGA	MWEAILASLAGVIGIIAWWTKNRAKTRRERDDEEIAYNRRLRDTEVDSWIHRR
Ga0209617_100010565	F009142	N/A	MNNSVQINVEDALDNLLANIPNLNVYKTNRVGAKLFPSATISASVGGQVLGNYTGVYEVAVTIDYSDTAAKISQEAFDAEYCSIFEAFYSETPPLFTKIQNNITDTKVYTARITGQTPTIRTAKRAWQRGLKMSLICTPSELDDGLRSLNFSQIQNSMYVAVI
Ga0209617_100010568	F014487	N/A	MPLLLLTLFFCSCSPRHTDNNALPNYEMMQAAEDAGKTPSK