Scaffold Ga0209617_10000780

Overview

Basic Information

• Taxon OID: 3300027720
• Scaffold ID: Ga0209617_10000780
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14492
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (36.84%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020649	Metagenome / Metatranscriptome	222	Y
F034466	Metagenome / Metatranscriptome	174	Y
F047507	Metagenome / Metatranscriptome	149	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209617_1000078010	F020649	N/A	MVIKIKNWWADLKTYDKFFFITFIPAILFTLWGLSDLYFNYFDLLTKEDHLQFFLRVFFPVSLATFITVLEINNRKKLIKDIKTYLKE
Ga0209617_1000078013	F034466	N/A	MDNQLRNLLLSNYERSLPSKRDTEDFISNFNQYRIKKKAQEKTYYSLALIVLLILTALGSIALKETTNKLDIQTASGIEK
Ga0209617_1000078015	F047507	AGG	MINLSLNLALKTIEKISKLWNWKTKTLSVGLALIVSWVACLKIGFELKKYNSITNLPNSCFVDAMIYASRCNLLLVTTSDSWNSVYGFTFGYKDDKEATLGHAVCVFEYNNNLWMYDPNWGTSPICQIGDRKRYKEKIKLHINKTYPIIVIEDFMLNDWTYVQKAKKNKMNKSYQEVSIHLDENKKE