Scaffold Ga0209617_10000560

Overview

Basic Information

• Taxon OID: 3300027720
• Scaffold ID: Ga0209617_10000560
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16523
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (19.05%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000557	Metagenome / Metatranscriptome	1026	N
F001129	Metagenome / Metatranscriptome	768	Y
F014844	Metagenome / Metatranscriptome	259	Y
F032960	Metagenome / Metatranscriptome	178	N
F044457	Metagenome / Metatranscriptome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209617_100005602	F044457	N/A	MKAKTYIFCHDTDIVKQCEAEGRFRDFFPYTWVMLGFKDFDGMAEFDHIVARDEPDNIESHRNLVAWTGWYALAKNGYIKPGDVVNLFEYDLTKTGDFDQRAYCAYFRVPVDVVPYWSCGDNYEPHIKQLTGRGAKEFYQPVVPVTSNYTLTWDDSYLDLTIACIEQDLVAIPHVGHILERAYSQRFADIPYNVAAFKHAFANSHGF
Ga0209617_1000056020	F001129	AGGCGG	MEFVDGAVTGKNYDFLVVNTAATFTTLTGTGSENLLTAYNFSGKSLSAGIVISGRNGGKITAVTPSVGSVIGFTFL
Ga0209617_1000056021	F014844	N/A	MLIGYGYGYPTNQLLGGGNPFWLAFNQRADADGALPAEAAVNGCLQTRFL
Ga0209617_100005604	F000557	N/A	MKLQDLTIDQFQRIGAIEFSSVLGDYDKRAGVVAIVEGVDISLVREMPAKSVLKRYKAIISEWNALPALGYKRKFKAGGKWWIPTVFTDELTAGQLIELMDANTTDEKQLLQNLHRIMATLCREGGFMGWFPKKYDGAAHAERAELMKKYAKVGDVWGVVSFFLLSSESYLKVLSDYSKHLMTKAGELT
Ga0209617_100005607	F032960	N/A	MATTVLSGSPQVATPVYNKMLFKVSGSLTAQPNYRYVCDVKNPAGTTLARLKCDKLPTTSYGFFDVAKVVETLITPTKPSLTQTSFVDHAGYYSGYRLDFMEEYGNTPVVQTGTVTTLSGNVSFAGNLEQLELATWSGGLYFPSGAIVNDTTRMLTTPTTRTVYADGYGWLSIGQFNYGVEKAYIQYWSATGGTFARQFDVSASGTSGSTVIRFGVGPMNLKALTSGQCSDGNPGDYLFQGNAGDFYDVYFQKGSNITIRQRYIIGQCQRFNSIPVHFQNKYGGIDSYTFTLKNRKRANISRQTFGYNSDVYATTTYDKVWAGEFDYVYALNSDWLTDAESAWLIEMVRSGQVWLELDGQLVEAIVNANTYQFTTRRNDRLTQLQVEVAVAYKNNIL