NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209617_10000052

Scaffold Ga0209617_10000052


Overview

Basic Information
Taxon OID3300027720 Open in IMG/M
Scaffold IDGa0209617_10000052 Open in IMG/M
Source Dataset NameFreshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38286
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (12.96%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameLake Erie, Canada
CoordinatesLat. (o)41.77Long. (o)-81.73Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001640Metagenome / Metatranscriptome659Y
F002778Metagenome / Metatranscriptome530N
F004839Metagenome / Metatranscriptome421N
F087195Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0209617_1000005222F001640N/AMRYLFLFLPLFSFAQDVVKDTVYIQKQGNIYYIIQQTTLSDSTVTGSKQILGDSATAIQSLVTDAERQSNTIAIHAKPIITKAKSVQRINYYNDLHQQISGKPVYFTTAQRDTAKFVGDWKLNFNGEIIDGKIELNVNKRLIFNPDNGKVYTISTNLLLSTFTNQISFAFNGVKYDLYKYADGKFATIDGNVRLIKLE
Ga0209617_1000005228F004839N/AMEKNFTNTQFKWTFESISDNIPTIMLLTIVLTYGINAYLTAIFLPMEFWLAIIAASILQLGRFAVVFMDFLNPTKGRSTYPPKIALGATIVALVEIFFGLQEQYEGGEFITMFLFVGTIVVFGYLLEINFVDKGVEAYGINNQKKTRRRTPRKPKENKQTIELNKAIS
Ga0209617_1000005234F002778N/AVKEYNLQMMEIKAFCDEVNTWISVAPSAEMLDECDEYLRQLSAYYSRYTVISGMNESIYSQLLMMCIRDMAEDEYKRIKHSSTLTDYYVKGKYPKATAIFEQCRAVKQLLIITSDNYRTLLSSFRQERILVGHMTT
Ga0209617_1000005238F087195N/AMTTEERQKAIYEAFYHIAIYAIVTHTHSRDGLARLEYMMEIIDKIPVKYDTQDQNFNHRYYKDVLEDAIKRNNEFNEIK
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