Scaffold Ga0209998_10038685

Overview

Basic Information

• Taxon OID: 3300027717
• Scaffold ID: Ga0209998_10038685
• Source Dataset Name: Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1077
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter methanicus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere → Arabidopsis Thaliana Rhizosphere Microbial Communities From The Joint Genome Institute, Usa, That Affect Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Walnut Creek, California
• Coordinates
  • Lat. (^o): 37.931388
  • Long. (^o): -122.021761

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005366	Metagenome / Metatranscriptome	403	Y
F094253	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209998_100386852	F005366	GGAGG	MYPLTLQTQIMRHMLNLAKDMASGDLLESRKKLEEYPLCGDPSVFDQIMRARAVQDRMWGREVDDTKNDPWRWSTYISHCAVRWLRDPHKWTREDTDDFYDAMIETAAICAAAAESVVRQRNTNGRTFYEPGSGKGK
Ga0209998_100386853	F094253	N/A	MWTMTPQLRVQVVDNEIVVTVPGFRYSATYCKSYNARQLVARNVPTTDDLRITMKKSEFLVAAKKLANDKARELGWIV