Scaffold Ga0209815_1072723

Overview

Basic Information

• Taxon OID: 3300027714
• Scaffold ID: Ga0209815_1072723
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1190
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023213	Metagenome	211	Y
F023716	Metagenome	209	Y
F105880	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209815_10727232	F023716	GGGGG	MKRRKNWDVKPEPLFRVPIDASVNGYIEGVEAQGEPTVKVGDLVRYIVPDDWEHHAIEAPIFTDEPALGVIRSINWMLISTNKGEYYIPEAEVYWSITSKITKHTHDSLEVANAI
Ga0209815_10727233	F023213	AGAAG	MPFKVGDILKYHHPSEADGEQLDLYHFGKDHLDGKLALVLEMSVSATVDTCDYFCYIDGDRMWICEEVLKEVKDEN
Ga0209815_10727234	F105880	GAGG	MRIRKRIVSKAISFLSMFLSPEEAKELFEELREIAKKHKERGGEE