Scaffold Ga0209815_1015550

Overview

Basic Information

• Taxon OID: 3300027714
• Scaffold ID: Ga0209815_1015550
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3323
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008105	Metagenome / Metatranscriptome	339	Y
F014794	Metagenome / Metatranscriptome	260	Y
F018622	Metagenome	234	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209815_10155501	F018622	AGGA	LEFAKGKMLIQRAALDSLLLNNVCDIRFARRTVGPDKASTRRMLCTKSQSLLNSVNGRISLNYFAAKGPPHSYLGTDNLVVGWDILMQDYRNISMNQCNLISEIPANEEFWVYFNESIY
Ga0209815_10155502	F014794	N/A	MASASIDSLIPTRSLIDLTTPLKGDFGIEDDYELSFIFDDILLIEYADETDKGEIERNGIVIPANAMNKAWRRGRVILAGPDVKYTKEGDIVIFPNNMGVTISNVTITNKGRIKNGLFLNEERMFGICKRKDVDTKSST
Ga0209815_10155503	F008105	N/A	MNFFQLQNKLFYSKKDKAGDLDTEGEQAFVPFLFNRWLSFYNNDMSVFTNETFNKFSTIFDDKQQAYRLYYYLIPRLKWKKISYIKKKKKEVEEENYLELIAKNKNISKRELLQYVELAKTFAK