Scaffold Ga0209815_1009302

Overview

Basic Information

• Taxon OID: 3300027714
• Scaffold ID: Ga0209815_1009302
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4709
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006199	Metagenome	379	Y
F021188	Metagenome	220	N
F049950	Metagenome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209815_10093021	F006199	N/A	IVNYTADTNGVTPLAFWVKIKPTDSYLDRELRASGKLISRCLQHGEDLKDLADTLSQDNIIGQMVNYFHKNVEDIILGTPIDKKQRMLSTDPYASTMKE
Ga0209815_100930213	F049950	GGGGG	MEIQDIKKYFIYIPVVAAVLSSLYYGITTFNSTIQSIEKAAVDIEMIRKDLGYWQNEMTRIKEDFTREMTRMATDLAEGSAYIEASRDSSYKTADTVRQNSYDIKELTRQLNGGW
Ga0209815_10093023	F021188	GGAGG	MEDTEEIEVIWIPEEEAKYNLTVQNNAGYAELIDLPASTVDRMCKKKFGHTNWARMGAIFPEELTRNPHELDYLEGIVYFKHPRLV