Scaffold Ga0209815_1001300

Overview

Basic Information

• Taxon OID: 3300027714
• Scaffold ID: Ga0209815_1001300
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16725
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038426	Metagenome / Metatranscriptome	166	Y
F056916	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209815_100130033	F056916	AGGAG	MKRALMTLSLYLLSSAAYSNELDQLINSSSAIVSQIDKGIKMAGAGYGYANQGGALSNGQLAGTAHISTEQLNAYNSALSNMSGYEAYGSVQALLETQAATELQLMDSAIETFTEVVVDMIAVVEVAEIAAEAATPEDEAEVQAYIVENETALVITQEEVETYNQSLDDIEEHGNNASAYLGVAANTEAVAFLQEGAEENNSNADFATLSYDSNEQWVAVNYQGTNNSNAVFVNGQDNFSMNFYLTEAEILAAGAESNLYLTGPTALGYRCFMYNEECDP
Ga0209815_10013007	F038426	AGGA	MKFDIDWDTVEGIGTEYVKHSYVMLLQIIEGHDPDNDAHQAELLRDEWRVECFETVLKYILPEGESHEFIAGQRQKHLSQIDLFN