Scaffold Ga0209499_1042093

Overview

Basic Information

• Taxon OID: 3300027712
• Scaffold ID: Ga0209499_1042093
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130208_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1934
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035668	Metagenome / Metatranscriptome	171	Y
F059760	Metagenome / Metatranscriptome	133	N
F077016	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209499_10420936	F077016	GAGG	MANTAENVREFYRRQGEERERARIINLLKDQNVIRHCGATGKLVFVHCTSLEVLYLKDDLANESAA
Ga0209499_10420937	F059760	GGA	MTETKDVITEAITRSRDNAIEAVISIVKSYRDLQLPAQPKEAYDLGARDTLDTLLIHLNKFAEGVKAERSE
Ga0209499_10420938	F035668	AGGCGG	MSCKNCQEDCACTRVNSVNIFSRDYKAGVSEGQRAEATRTSDALIELERKQVITNAQLQAILDLILEKL