Scaffold Ga0209499_1040691

Overview

Basic Information

• Taxon OID: 3300027712
• Scaffold ID: Ga0209499_1040691
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130208_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1976
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011914	Metagenome / Metatranscriptome	285	Y
F026210	Metagenome / Metatranscriptome	198	Y
F071966	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209499_10406911	F026210	GGAG	MSPILGANPLDYDATYPQVAESANDDAKIFVMERNEGKEVMFQIEDGTQYYGRIGYVPNSEHYCVVVDRNGTPWEWYVRSEALRFVEDIGTKIG
Ga0209499_10406913	F071966	GAGG	MFSLLGSHIDYKGYIFKPFYLLLGALCFIVLLSLLASLYIFLFIRNTLEDVLNNIDKNRNKYSRMK
Ga0209499_10406915	F011914	N/A	MITHNQIKALDENELAYLFYCCKSEWDSKNMGYDFDWYILKAFRNNMIQLTLNKYSANLTDDNKGLIMQILNKLEANI