Basic Information | |
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Taxon OID | 3300027712 Open in IMG/M |
Scaffold ID | Ga0209499_1040691 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130208_EF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1976 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Croche, Canada | |||||||
Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F011914 | Metagenome / Metatranscriptome | 285 | Y |
F026210 | Metagenome / Metatranscriptome | 198 | Y |
F071966 | Metagenome | 121 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209499_10406911 | F026210 | GGAG | MSPILGANPLDYDATYPQVAESANDDAKIFVMERNEGKEVMFQIEDGTQYYGRIGYVPNSEHYCVVVDRNGTPWEWYVRSEALRFVEDIGTKIG |
Ga0209499_10406913 | F071966 | GAGG | MFSLLGSHIDYKGYIFKPFYLLLGALCFIVLLSLLASLYIFLFIRNTLEDVLNNIDKNRNKYSRMK |
Ga0209499_10406915 | F011914 | N/A | MITHNQIKALDENELAYLFYCCKSEWDSKNMGYDFDWYILKAFRNNMIQLTLNKYSANLTDDNKGLIMQILNKLEANI |
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