Scaffold Ga0209499_1036096

Overview

Basic Information

• Taxon OID: 3300027712
• Scaffold ID: Ga0209499_1036096
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130208_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2133
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001915	Metagenome / Metatranscriptome	617	Y
F015330	Metagenome / Metatranscriptome	255	Y
F044446	Metagenome / Metatranscriptome	154	Y
F103134	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209499_10360961	F001915	AGGA	MEWSLAHPLHDVEDIVEMADSFFGHEADGIVTRSRDVFRHRVTVACTEQVFNKSRELIAVCRENPLVELDEGHPDQPKLMGFCWFDRGGYTTYSNEEISNAKFHHLDLFLPVRTRVLLINQMIDQHILWANKYGVPIVCSTSIRAEHDGFMKIHAKRGFTVNGSYAWIRTEKGMECLTKK
Ga0209499_10360962	F015330	AGGA	MSDEKVVELKTKNPVGRPKSIVNRVTEYGALFNQLNEQHIAKGLPPLKTAMEVLIEAMQSDELDIKDKARIADKLAPFESSRAPVISIEHVQNIVREEEVSADDAMDDFLDSLRKV
Ga0209499_10360965	F103134	GAGG	MSGYGRVINGGKQMSKGLTKGINDKLDGYEEENERRAVIANAVKNAFTVRHLSDQTTNNSNNGKFQTVKEKAKVNP
Ga0209499_10360967	F044446	AGGA	MATYDIEALKADLPTAKDLAQFVYDKTQIALDLVGKPKEDQYQVAKNALEGKKIPIEFITAENPYVDKKDLIPVDELKVIPPRSKDLPPEDTQVHYFGATNMPHPLD