NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209499_1009869

Scaffold Ga0209499_1009869


Overview

Basic Information
Taxon OID3300027712 Open in IMG/M
Scaffold IDGa0209499_1009869 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130208_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4922
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010247Metagenome / Metatranscriptome306Y
F013525Metagenome / Metatranscriptome270Y
F031868Metagenome181N
F032656Metagenome / Metatranscriptome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0209499_100986911F031868GGAGMKTVQQEIDRLFLESKKHPHIVETYFEYYYALLDHSDLTLDEFYKLYPQYDVEKTDSLYWKQFMQKWKETCREQK
Ga0209499_10098693F032656N/AMDNHFYLITYAISFVKVNEDNIREDIAHVRFFDNSNFTNSSSFLASLKQVKKLRITGVEFDVEECDWFDYYEDISNTVH
Ga0209499_10098695F013525AGGMHDLSLKNPDQIKQELDSISEQMSEALYTFRRCEEFKKITFSQLTLTKKLEKNCSVSEAEKWAYSDKDYATIVEGLLVAEKNYSILKGKYANLQSWVDLYRSWLVTNRELSR
Ga0209499_10098698F010247AGGAGMNVQGVVKYVYDNRLTKDGTPNKFPNFKFKVNDQEIVLWSAIKPIFLEKGKKVSVTCQASKKNGSLFVQSKEDKSPMIQELPADNKPDTSFNPEELEKELANVAKDFDADLRIETKKPINKDEYMFVMALAKSAIESGKINVNKEEIDLLIKDLKFLFQMNFHN
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