Scaffold Ga0209499_1009126

Overview

Basic Information

• Taxon OID: 3300027712
• Scaffold ID: Ga0209499_1009126
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130208_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5177
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034813	Metagenome	173	Y
F083677	Metagenome	112	Y
F083691	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209499_100912610	F083691	GGAG	MSISAYKEITEWDDNKEFKVPNHTYLFDGKSNILAYAKASNNELVILHKPLPLDGRRRKFIKVKHEALDAYGATIVLAPPPVANNINIFMVKSDSGKEYTVEKIDGKYSCNCIGFAYRGKCKHSDEIKNRK
Ga0209499_100912613	F034813	AGGA	MSYDSDYESVYMVEFESGRTIHVQFFDVEEVKEYCADNHPNDVVKTIYKEVYCNFAEAE
Ga0209499_100912614	F083677	N/A	MSELNEMTVDELQSYFSDFHKDYYGFRPRFATHEEWNNRDWLVEHIDGIHNAMDERKKTPEGRASLRAEGWIIEEKETI