Scaffold Ga0209499_1008337

Overview

Basic Information

• Taxon OID: 3300027712
• Scaffold ID: Ga0209499_1008337
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130208_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5494
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (26.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011648	Metagenome / Metatranscriptome	288	Y
F040482	Metagenome / Metatranscriptome	161	N
F053781	Metagenome	140	Y
F085148	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209499_100833712	F053781	GGAG	MTPLKLTEKFLILKLFCKMYEDALNRKDYTQMLELSVDIAESGEKLEQMTVDHINGHQK
Ga0209499_10083372	F011648	N/A	MSRVNRRTLMSEQDQDFNSFQEHLERIFKDLEDGVFITADDIGDLRYACGLPSPVQKNPVLQAVFDDFSTIFRSKQ
Ga0209499_10083376	F040482	N/A	MMTWNLRLVNMSNSYEDYFEIREVYYDTMGKPVGHSNAAIGGEDRLEVDRYIELAKLALDKPILKFADNENTSKDH
Ga0209499_10083379	F085148	N/A	MNNYKDKINYLAHSYIAIANRYRNWELVKELIERNKDTEAYVKKRIKEILRK