Scaffold Ga0209499_1005771

Overview

Basic Information

• Taxon OID: 3300027712
• Scaffold ID: Ga0209499_1005771
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130208_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6966
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009524	Metagenome / Metatranscriptome	316	Y
F036677	Metagenome	169	N
F061658	Metagenome	131	Y
F082379	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209499_10057714	F036677	GGA	MAAGVQFEVVADKNFDQLRLGFLKGSNPTAFKRLMSFAALNAARTLQKPMRDKAPKGETGKLRKKIIARKARFNNPAAVVGIKGGRNGVFYGWLVVGGSGTRRTTPNGTFTVKGVKGRPFVDQVVKQASNIDRAVESYSKTVAAYFNDEPFRNTILKFKRGNQR
Ga0209499_10057715	F082379	AGGAGG	MDTIKIALEGEFAGWTAELRKQVTARILLDLESGESSRSLAAFSKLIVSHNFKGLDGKPVEDILDAPVDALTQTLEAWGKANQPNPR
Ga0209499_10057717	F009524	AGGAGG	VTDLTILDAIADQLASVNPPSGYTLRKVYATPPEGVPTTPAIVLFPGDDTITIGNGNRSTVLTVAIRLYLLPIPRMDEKYRDLYTWRAWLRTVFDGAVTISGNAVQVAVTGTTLGTDTYADQEYLTVEATAEVTVYDTVAFTA
Ga0209499_10057718	F061658	GGAGG	MQVIIEPAYLDEQTGMLTEIVRDAETGKIIGKNERMPEEAPE