Scaffold Ga0209499_1003148

Overview

Basic Information

• Taxon OID: 3300027712
• Scaffold ID: Ga0209499_1003148
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130208_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10211
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008750	Metagenome / Metatranscriptome	328	Y
F009735	Metagenome / Metatranscriptome	313	Y
F071151	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209499_100314812	F008750	AGGAG	MMRRIGLRELFKDPFRKPSPLEIIASELSEAHLAKLEAETAVEYTQSIVDYNVTRITRLNSRMDEYRNDVDAIKVGGTK
Ga0209499_100314814	F071151	AGGAG	MNTCCDYGKCTNGPDCPVRKQRIKEINDAYVNGYNDAQLGDPMDDLVDTFKALLTMVAMMLGVWIVCLVIWGK
Ga0209499_10031488	F009735	AGAAG	MTMMSGVVEAVSTKDVTTKFGVKPTYSFKVNGTWIKCGFKNPSVDVGYTVDFDGVTGTYGIETKAVNILSRAIAAPVVTASTAVPTTAVPKSYGGGGYKDKVFPIPALHGDRAIVRQNALARATDLYIAARGGKPFELEASTLDLVIKLARKFEAYTAGDLDMAEAMKEDSDEQEVTSNEGE