Scaffold Ga0209499_1002518

Overview

Basic Information

• Taxon OID: 3300027712
• Scaffold ID: Ga0209499_1002518
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130208_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11688
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (30.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010746	Metagenome / Metatranscriptome	299	Y
F010897	Metagenome / Metatranscriptome	297	Y
F011914	Metagenome / Metatranscriptome	285	Y
F032572	Metagenome / Metatranscriptome	179	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209499_100251812	F010746	N/A	MTYKCAVSGEALSPERVEALQVLGVPESQWTKKEHSQTRKLRAVYAGDDGSNDIVICDAVDGGSMFDNAVALEVENES
Ga0209499_100251817	F010897	N/A	MKLINSTSYCSEKLKEIIKWCMPDGVFLKDIRKIDFGNTKLNWHGRAWGSMRVHIGVPRYGKYLRPYNTGGRRGYLNVETYSWEEGLIELIAHELRHLYQYKKNKFYHGIKKIRKYNMGTRAKLCEVDASLYAKRKVREYRKGNYKLNLV
Ga0209499_100251824	F032572	GAG	MNSTYQYIANYINKPTIFCYILDRVVNNNPYLFGGEYNKKLLNKKVWMAKQVFPHCEPTQYTYFKTFKEAKDALNRWGAKWERV
Ga0209499_100251834	F011914	N/A	MIDTNQITALDENELSYLYYCLKTEWDSLNMGYEFDWYILKTFKNNVIHKTLNKYSGNLLPEHSEIIMNILHKLEANK