Scaffold Ga0209499_1001576

Overview

Basic Information

• Taxon OID: 3300027712
• Scaffold ID: Ga0209499_1001576
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130208_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15551
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (94.12%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001477	Metagenome / Metatranscriptome	687	Y
F003212	Metagenome / Metatranscriptome	500	Y
F003863	Metagenome	464	Y
F004110	Metagenome	452	Y
F007691	Metagenome / Metatranscriptome	346	Y
F011484	Metagenome	290	Y
F014590	Metagenome	261	Y
F029678	Metagenome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209499_100157612	F029678	AGGAGG	MSRVIGFTIFNKETGQKLATLPLTIPIGATVEAYERDGQSVSWGWEERE
Ga0209499_100157619	F003212	GAGG	MKDKWLVTIEIDTYDGDPAKWDWDYIFTSGDDITIIESQFKGRVLPTSEGESND
Ga0209499_100157621	F007691	GAGG	MDTLEQLINEIYEDNYSHLDLIDNMGGEACACPIHTTLNTIVKYRDGKEGE
Ga0209499_100157622	F011484	GAGG	MQELEQFLNVEAEWVLERLSTGTESNDRNYYQGRLDQLAQVRRLLNLPQIMRERA
Ga0209499_10015763	F004110	AGGA	VTELHPVIYDLVPSVANTIYRRYNKHVEKDDIKQELMAWAMTRVEDHTIDLMEPIEERRRHNEQRIAWQMKRAGERYARKEKAAKSGYQTNDEAYYESATLGQLLPFVIASVIDGTVLEQAQEMIKDGQPKGSSSPAEGGNLLANLIDIKNGFLKLEQEDQAILRMRHHESFTLQQIAGVLECAISTADRRCAQSLRRLQDNLGGVSPWQ
Ga0209499_10015767	F014590	GGAGG	VRTRHLQLVSSTHSDTTNDKSDALSPYGPVRAGLTTSQTTSDQQLTELLNSLENAVANLKYKSFEVYDTLNTAIETISVALSGGTTDTVGTNLLD
Ga0209499_10015768	F003863	GGAGG	MESKEVSGKQSIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKSWIISSDSKLTIAVHTRANAVPDVAGRTDYESTDEGNNGGEA
Ga0209499_10015769	F001477	AGGGGG	MSRVLRFDSNGQPFLGDPPSNVYTIHPPKSDFILFYEVVEAGGENTWGGADAGQAIQWLAHAPAGSRILVSAWDSDEEDAHLVGQTLDITEIVRAASL