NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209499_1001506

Scaffold Ga0209499_1001506


Overview

Basic Information
Taxon OID3300027712 Open in IMG/M
Scaffold IDGa0209499_1001506 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130208_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16031
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035189Metagenome172Y
F041772Metagenome159Y
F048303Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0209499_100150610F041772N/AMEVILKNVAAALLAYSAHYSATKFYNYACVPDGFMGYLSGLITTGSPVCQAGVQIISNTQVSYSSMIMIGITRVLVDMVAPGTLNDMMPDIPNIPKVL
Ga0209499_100150619F048303N/AMSALPKTHILTKDEESFVKKLSPKEKELHLLAIQLLETSYRPEWSHMYKEKPHSK
Ga0209499_10015065F035189N/AMLKEKAERLKETITLLKKLPEVGIARESYAYSQVQELMTEWINGGGYKKEVIDFESHVGTLTLPVIEGQVSSLDLKVKVKIKK

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