NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209499_1001406

Scaffold Ga0209499_1001406


Overview

Basic Information
Taxon OID3300027712 Open in IMG/M
Scaffold IDGa0209499_1001406 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130208_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16765
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (68.18%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000934Metagenome / Metatranscriptome828Y
F002085Metagenome / Metatranscriptome595Y
F058557Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0209499_100140618F000934AGGMPLNTILSVAESVGINDQKFVGQVVSRNQRISTSEILTVQPFGFEIKPMNYLLYSQNRTLLSELRVADKSTEQYLNFGSTGWLNYIKYQGDMTSAQIGACLWQTSSSGKVLVLGSLPSITSTLYIVRTGDFVQVGRYAYIATADVQRGAGSTVNIPVHRSLITTLTSTVQCVMGQFGTTIALPGGTFTGVTFPIILRDYPTYTLMPMTNDSFISWTGTFKAFESVL
Ga0209499_100140620F002085N/AMNNINFNTTLVDWINNSSAIVTWANNSSVTIEWGSDVANNNIIMADFVRVTTVVAGVSTVYLFATTPSALTITIDGVPNTFDALGGLIKIGDAQRDIKSTANETTATLVGLDTALLGWALGQNIKGSLIEMWHGFFDTNNNLITAGGMNGLYKFFTGYINSFTISEQWMEEVRQYVGTITISASSIQIILQNRTAGRYTNNNAWQFFNAGDTSMNRVPVIQTVNYYFGKDAPPNS
Ga0209499_10014069F058557AGGAMAIARFENVDVNTLTFAVDSYGSGNTVITKKFTSRPLVSSVKNSVAILEKYRIYSDLIQFKFNFTPFMQDVVYNQNLYSFTWNNQDWRVTDAIESNDRMSVTVMCYRSDPATKV
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Institute for Fundamental Biomedical Research
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