Scaffold Ga0209499_1000569

Overview

Basic Information

• Taxon OID: 3300027712
• Scaffold ID: Ga0209499_1000569
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130208_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27112
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (75.61%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001091	Metagenome / Metatranscriptome	781	Y
F066590	Metagenome / Metatranscriptome	126	Y
F072118	Metagenome / Metatranscriptome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209499_100056915	F001091	AGG	MNIRELAKRIAIEKKLPRADKYDLFLRDFDNMVELVGLVQDPTLDMNDFRGREMLFPKRWVTLTVLPASEPVNV
Ga0209499_100056917	F072118	GAG	MTIKLVTFKTNHTIMGEVTESSKETFITVKQPVQVVSVPPRTSTNPGSVAFSPFLEWAKEFRTGFKLNYGDILTISTPVEELENQYNQIFDSGIVVPPKKSIIT
Ga0209499_100056924	F066590	GGA	MGTLWEKLTQFFSKRKKMPKENEDYRFIDFTDSELTGIQILKDEYAGVVYHYGKVRVKEQGEMGVLEFGYTLVNPGKHDINLLQKDDNFVTIMGDILTEILTKQANETIRKNDTEEFNL