Scaffold Ga0209499_1000496

Overview

Basic Information

• Taxon OID: 3300027712
• Scaffold ID: Ga0209499_1000496
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130208_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28870
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 50 (79.37%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000652	Metagenome / Metatranscriptome	959	Y
F007524	Metagenome / Metatranscriptome	349	Y
F007580	Metagenome / Metatranscriptome	348	Y
F014848	Metagenome / Metatranscriptome	259	Y
F019477	Metagenome / Metatranscriptome	229	Y
F022196	Metagenome / Metatranscriptome	215	Y
F029334	Metagenome	188	Y
F041568	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209499_100049627	F000652	AGGA	MKKVVVRTELMQELEVPDDWEREHVLDFLSEFQSFRTAFQGVSNEDQTARILDLGVVVETVEQLGEEAYDEQD
Ga0209499_100049629	F022196	AGGA	MTLPKPIPSSTGGVITFTATGLNHSAGKAYSGRIAAQEAKQKPGKR
Ga0209499_100049636	F007524	AGGAG	MARVTKSHAVAINKIMLPLIKTVAYFDADEKDLSMFKMYVDDIAHNVAALHVFNDTLDAAQLHDSIMLQDTLPREHFYAVLKYIEDNNLIRANAFVCKSHA
Ga0209499_100049641	F041568	AGGAG	MFTTENQRALKAELDQMYADQGAAFTAGYLNSMAQEMLMLMPKRQQKAFIRQVATFNGRQLVTVKNCLTGAEVEIRREDRGTVNDPSMERFHSM
Ga0209499_100049643	F014848	AGGA	MQTYYDELARYERDGFTVIVDKTYEDMHPRDSFDDSCHDIDEICRKIDNGTYDWFMLRVRVMVEGLELGSSYLGGCLYSDARDILTDGVAEDCIWEALNEAKPRVYALKQKFAELSDRVDRETV
Ga0209499_100049646	F019477	AGGAG	MGSWLFKDFRIGRMFHLNGNDYVKQSTRTARMLSTGRVFYIGQTELIYPIAY
Ga0209499_100049660	F007580	AGGA	MKTVILEKIGHAPEAVYVFLRDHLGRISAHTLGWITIIMLHFASIPTLVAVLLAQSDRLPPVDLMVFVWSALITLFFKSLIERNFLYIATICLGFAAQTLIMGLILFK
Ga0209499_10004969	F029334	AGGAG	MKELDTKRAGGFALAAVLDAQRRNSNNKSLYTQEQIRRALSVRDLLDSAFSYHSLYINYRKKFIAVKVEGARARDRMSKQVIELFEQQGYGVVSTQQGIIVRLDSAQI