Scaffold Ga0209499_1000150

Overview

Basic Information

• Taxon OID: 3300027712
• Scaffold ID: Ga0209499_1000150
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130208_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 51551
• Total Scaffold Genes: 82
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (26.83%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030662	Metagenome	184	Y
F039455	Metagenome	163	Y
F048735	Metagenome	147	N
F055388	Metagenome / Metatranscriptome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209499_100015029	F039455	N/A	MGRYGDIVSFLPVLKNEFDETSQNPSLVISKDYADILEGVSYVNPIVYDGTFDDITGALEYLKTLNKTATATQVVGIPDVLISQVYGNHVGPKIICDSFQQDAWRLAGKLDLWPSQPPLIFDKRDAKREKKLTKGISKDKPWIVVSTGGTSSPFPYSDLLWEILNHSLPDFHIVDLVTIKAEKFYDLLGIMDHPNTHAMILTDSGPLHLSYATQKPVHALITDSPSLWHGTAWRPFYASYTRYKNFPRDVTRILDLIRNPRPKLTHQNIVHVYQKMPWATGDEKRRNELAAKTWESIGCIDLGLDDNCFVRSSAEVIPDETRRIPMIKDMLRLACAGRDDETVLLLTNTDTCVTNNLIQRLEGVLPAYSYRRDFKRLDDALPYDRISAGAKYSGCDFFAMRVGWWRRNHHLFPDMVLGRHSWDRIKRELIKSAGGREIEDLIYHEWHPSLWEGDGLHRDPSNLRNCKLAREWLTERKMPLEELETLNYEGKFKRPDFSKLRT
Ga0209499_10001505	F055388	N/A	MAAQNGVTFSSCQDVDTLFREARTYYNPFFIKKMAINSIYYGRLETETWPLNTLPTMKAFRFGRGWYNPDQPWEQVQSGRCIQNADDVQFETIAHPGTESYSFSLFTKAMRTDWYQLTDFMYRLFPQEEMDHIMATNVNITKNVHEEFARSNWIGGAGHKWVPISNGQSLVSCATPDDQMFIVQPFEGTNEGSFNMGYVYVKMAASSLNNIGLLSLDTLDDILINLQREDDAYRLDVSEAAGRPLLEIIVPDARVLRQLWQYAKQSGGWWESVSDFDDKQLQYSLGIDRVIGNYAFCNDINGVRLNVDWVYNASLPTFNVNDPTTWPRLVRVLPYYPVTTELGCKYIQNPAFQYADFGITNPWVNKAMIKWISPSQSGIGEAQGMTQNYAGDWEWKNPDWECNIKRDQGFFWNQFRMGMQFQDPTLMHSILHRLNNAQLVIPAACTLSPNYAPQYTPDCYACNSTVSQPI
Ga0209499_100015080	F048735	N/A	MIYNGLCLDTPKDTTYGIPYFESSPQFIRELMAYVYTRGEFGRRERIKRGIRIEDTDLKNPTQHMINCFNLIYGNDVLLQSQGIPNNYALDIIDLFCNENDWGIAGCASSGKTFSVAACIVIDWLCAPNVTSTYVASTSLDASEDRLWGKVCTLYRIAMRNIQAQYKGATIGNLVEYRRMIVFESIDTKDTERDYTNAIKALAFPKGGEGKRAVENTRGRKNARMRLFLDELAEMDLYALDTRVNLGANPDFIFGGMANPAATANNPHTELCQPDDPMEWESVTRYTKKWRTRTGVALHLSGEDSPNFKLPDAEIPPFDRFLTIQGEANTLKRCYGNKNALEYWRNVYGWWPDSSVELTIFSKAFIQGCNLNYEPIWSGRTKVVCGFDPAFTAGGDRCAATFCRMGQNDTGRSIGFYLGTREYSSSVGDVFEESIAIQLVKDCIEYGVHPRDFGLDISGDGGKMMRAIIIEWSKYHPEAMFLFPISSMGMPTDRKISNLDQRTCKEAYDRLVTEYWFAVHTAMSTRSLVGIDVDKHGIMINELCSRLYTHKGRKVAVEKKLDMKHRLKKSPDLADSFTYAVQMLRKAGLEFNFEEETVSLDIQEIRDWENKLIHSKNNVEEEQMEEDWGYGGRGCDDDGF
Ga0209499_100015081	F030662	N/A	MRLKDRNGPIPSGLWYEYSDDKGTKYRVNGMELTYGASFTNKVKSDMQNNNVQVPDNLEYLIEQQICGRIAGQYCWQEAGDKVANVIHSFANLGDRVAASLGINANLEKTAKGCTSCQKRRQAMNQTLG