Scaffold Ga0209499

Basic Information
Taxon OID	3300027712 Open in IMG/M
Scaffold ID	Ga0209499_1000111 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130208_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027712 Open in IMG/M

Scaffold ID

Ga0209499_1000111 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130208_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	57046
Total Scaffold Genes	63 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (23.81%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

57046

Total Scaffold Genes

63 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (23.81%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037579	Metagenome / Metatranscriptome	167	Y
F053784	Metagenome / Metatranscriptome	140	Y
F080047	Metagenome	115	Y
F093194	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209499_100011110	F080047	N/A	MDDPFAILKHPFENSENPQTYAENVWTKVHREPARHMLGLVGGNEVSLPQGNMVDVESDLRRLNYPLTYCPGREYQPPATKQSTLYRKSTKGSVKIDVTQKHLPAIQMWPYAATFAPVPMKVTQCGRPEKY
Ga0209499_100011116	F093194	AGG	MSILAAFCNQLIRFFEELQSSYPEEKSISMGLEAIKAAKRSNPKLVLDMFHEYIYTPANDLIATRNDEELIKLAKITMSTRFNELMPALMIFDKYWPTMSQTNRDVIWQYLEVLCKLCEKARA
Ga0209499_100011142	F037579	N/A	MANAGTLLSDLDGKAPLSGDGDLVKMIYQDMNSNQDMRPGTSSGMTPGGVQGPMMPMPPPQQSTQQYHMDSGPPTAHIIGGQHPTAADFAQMLQSSTPGFAAAGNWDNGSAQQGSAQQAQLAAQIASLQASQGKAWSAYLGEEMKTPILIAILVFVVNLPFLSILVAHYAPWMLKSSGDMNIYGQLSRALLVGALFWGSNRILLPLL
Ga0209499_100011153	F053784	N/A	MPQMSFRIGLLFGLLIVLSAILWFMPKEGFTPLNTTSAAPVIERQPIVYPARNVSPGGASTPNQMAPQDEVRMASPEVAHDPYEQNEESSSMPERLRHPERMFQPGPDNSTLGIAEASGVASSSASQAGNALQTFTPEFAQNGGEFMQGIMANDTSEPGGYSAF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209499_1000111

Overview

Ecosystem & Geography

Associated Families

Sequences