Scaffold Ga0209499_1000033

Overview

Basic Information

• Taxon OID: 3300027712
• Scaffold ID: Ga0209499_1000033
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130208_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 104990
• Total Scaffold Genes: 110
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (20.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029103	Metagenome	189	Y
F037070	Metagenome	168	Y
F048777	Metagenome	147	Y
F073550	Metagenome	120	Y
F082681	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209499_1000033103	F073550	N/A	MSGVPQLPANTLFDVRLKKDQARQRAYNQILEQALQKVAHSATAPNQPTFVYFNVPAFVLGLPGLDLKDCIVYIVFQLRTQGYDVRYTYPNLLWISWAHHERQYLMEKNPIVQSMMPPKMAGPEKRRGASQVSLQQAATSTPNAGPALRAADYTPPAGFVETMERPSPYAKPRQSVRFSDAKDSLGNVLDELWKI
Ga0209499_100003362	F029103	GAG	MNSVVGAVMRAAVEGFTNPSGAESHRKDPIYADAIAIILTFTISILILSLAGLWLWNFSVVPLFEFARPAKSVFQILGLMLFLSLVHP
Ga0209499_100003386	F082681	GAGG	MIEWIVILLIIFCIIVWHYSQSSSQYSLSQIKESQIAISLQTIWEEKKPVVVSEVKVAGIWRSGGLKQTRFWNAQPIWQQYEDAPTALAAVPLSLELTWSEILGISQIESDTILRWFDMNPWLFSTRTEAHIGPDGLRQTYGWATAITCTEGEARCILLHNAQKSKLPPGWKGLKWSEATVAHHPLWTQVQNIEIILRPSTVLLVPPHWIFAIESLDPAKPIWWTRTDLHHPISKWAQGWNEG
Ga0209499_100003387	F037070	N/A	MSSVTSPINPKGTPYEKGSATESYPIQGSSTQPFFPPVCLKSHWDPTKIYSRTVPQTLVPLPLDFRPYTKVCLEYRTSAAGQNAPEVSDDVVFPQGGEVYPPDRYLRAIDKESLLRRMDRRLGTCDDDQYQPPRNSDMYVDRMLVPKSDKPTSRFVEEISMPQALLRAGTYNCRTQADEKNWLRSPRLFNNATKQDRYVGPTEPPRQNIWRDSRRCDDNLGGITAKKLEPDGCRAWGC
Ga0209499_100003399	F048777	GGAG	MPKWLNIKVMSIFGLCILAALIASAIINKPHANQGFEDSKNVVLDTSKNTMFPYTTEPINDLDQYELEAVFQNEGDRELKKQQINKLTRQYPLDWTNYPPNSSKFQSEQAKYIEGFSSDSSAADLNKPYKNIGDGNLTPPDTAAIEREERQILATYEPRKSGDMKSYDVYDAQKLLEQIYKPKGLVPSVNKRDDNVFEVVNTRSLKDKVEYEDDLPDAPTTSGHGLGPGEATIEVPPTAVEIAAGRDPFYEPTTSTRSSRTDYMRWTPGLERMFAPTYPTTDWVGKAT