NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209075_1181846

Scaffold Ga0209075_1181846


Overview

Basic Information
Taxon OID3300027711 Open in IMG/M
Scaffold IDGa0209075_1181846 Open in IMG/M
Source Dataset NameAgricultural soil microbial communities from Utah to study Nitrogen management - Steer compost 2011 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)868
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)41.7655Long. (o)-111.8143Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080011Metagenome / Metatranscriptome115N
F088943Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0209075_11818461F088943N/ASQSVWAHEDHLVAIYRRTGDTQFTHSEIADLIPCGAMLRYTVPGIFIPARDAFGVPLKGGSRARSNVWRWHPRAAELCRQAIERDHRWENLANGLTGGSECV
Ga0209075_11818462F080011GAGGMTWDELEELRDRLSYILERERAEDGFCPIEEGYYIQYRQAARRAVADINPDHSRDRDCYRTLQEIYDAVEEIYDIRSAKLRMAVRDRVVFRRDVDRPENLTVEEQERYDMAISLGGHNAE
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Institute for Fundamental Biomedical Research
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