Scaffold Ga0209075_1085909

Overview

Basic Information

• Taxon OID: 3300027711
• Scaffold ID: Ga0209075_1085909
• Source Dataset Name: Agricultural soil microbial communities from Utah to study Nitrogen management - Steer compost 2011 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1463
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management

Source Dataset Sampling Location

• Location Name: USA: Utah
• Coordinates
  • Lat. (^o): 41.7655
  • Long. (^o): -111.8143

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029085	Metagenome / Metatranscriptome	189	N
F047639	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209075_10859093	F047639	AGGAGG	MRFLNKHKYLRVIKFNSDKSSTITYHLSTKFKPNFLINPDHIFIYNGYRTIIITDKSAETINPLDFNSKFNSSDFKTAIESKLIKDTFSTLKHKIFDTPTILLLLNLVITFAVLYFLLKSQGAI
Ga0209075_10859094	F029085	AGGAG	MKDIKNDKLKINELLEENINEQLENGSSDLVSLIAISELTNLEKLKVITRIKEEQVPILTKLYLYAETFNIPFIKNTADNILQLQVSIRGLGRKELVNIVRESTPTEVKRGLFGTKEVFR