Scaffold Ga0209075_1045563

Overview

Basic Information

• Taxon OID: 3300027711
• Scaffold ID: Ga0209075_1045563
• Source Dataset Name: Agricultural soil microbial communities from Utah to study Nitrogen management - Steer compost 2011 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2292
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management

Source Dataset Sampling Location

• Location Name: USA: Utah
• Coordinates
  • Lat. (^o): 41.7655
  • Long. (^o): -111.8143

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029085	Metagenome / Metatranscriptome	189	N
F047639	Metagenome / Metatranscriptome	149	Y
F075995	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209075_10455633	F075995	AGGAG	LRRYRPLRKANVYISTNDFKKVFYGMRTLYTKGLSTQKYIRYKNRYYPVYYDGYHTYRARLKRXHNAWFLFSNRSPR
Ga0209075_10455635	F029085	AGG	MKDIKNDKLKISELLEENISEQLENGGSDLVSLIAISELTNLDKLKVITRLKEEQVPLLTKLYMYAETFNVPFIRNMADNILQLQISIRGLGRKELVNIVRESTPSEVKRGLFGTKDVFR
Ga0209075_10455636	F047639	AGGAGG	MRFLNKHKYLRVIKFNTDKSSTITYHLSSKFKPNFLINPDHIFLYNGYRTVVITDKSAETINPLDFNSKFNASDFQSAIESKLIRDTFSTLKHNLFDKVTILLILNLVITLGVLYFLLKSQGVI