Scaffold Ga0209075_1013796

Overview

Basic Information

• Taxon OID: 3300027711
• Scaffold ID: Ga0209075_1013796
• Source Dataset Name: Agricultural soil microbial communities from Utah to study Nitrogen management - Steer compost 2011 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5273
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management

Source Dataset Sampling Location

• Location Name: USA: Utah
• Coordinates
  • Lat. (^o): 41.7655
  • Long. (^o): -111.8143

Associated Families

Family	Category	Number of Sequences	3D Structure?
F079824	Metagenome / Metatranscriptome	115	N
F101423	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209075_10137965	F101423	GGTGG	MFTSERKPKSIDRFRVGKGSPAIKTFLYRLMNKPYLDIRIFRGYKEITRIVTPDTGMRQFSVEGIGTFVVPTGDYLLRQYFNKHCIYLNYNLQNSNPGEPVEAEKWTQYEYPPLSPEEFQVLLEAQTVADLLSETQKDTKWIWYLLIGGIVLVGLIMLMGGA
Ga0209075_10137967	F079824	AGGAG	MIYGFFGSIPGCPHQRGHHALRGNGKTLCLTFVGYLDYLSGRDVISNYKTSFSEFVSSERIAEMVIYEDIRDTTILLSELQLYMNSLGVNTKELRSFVGSVIGQSRKRNTDIHYDTQRYTDVHPRIRVQTDRAFLPRKYHADGKPCQLDRCDSTHFIYLYQHDPYMEHPIVKLQADQFGGLYDTNEIVALIKD