NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209599_10023783

Scaffold Ga0209599_10023783


Overview

Basic Information
Taxon OID3300027710 Open in IMG/M
Scaffold IDGa0209599_10023783 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1706
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001280Metagenome / Metatranscriptome732Y
F026561Metagenome / Metatranscriptome197Y
F045752Metagenome / Metatranscriptome152Y
F105019Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0209599_100237832F045752AGGAMADPTQTPSRGDWLCPCSGCTKSISAERKQLIEILLIKKAEYLIYRGSSFDAEGNLMWAKDDAQAYADGIDMVINLIEDRMPKTKGKK
Ga0209599_100237835F026561GGAMASPVNPTPAGAVTSEEATRKNPKQGFRSGLKVDKNRHGIRRETSLGPKPPKKTRPKKV
Ga0209599_100237836F001280AGGMCIECGCEALGSEAGIVNIPGGILDVSRDGDSGLTLNMTSTPEQTRQFINER
Ga0209599_100237838F105019N/AAKALEIRKANHKGPGGKVPGSMNKKKTGYRGVKSNTAK

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