Basic Information | |
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Taxon OID | 3300027710 Open in IMG/M |
Scaffold ID | Ga0209599_10023783 Open in IMG/M |
Source Dataset Name | Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1706 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Ohio, USA | |||||||
Coordinates | Lat. (o) | 39.849 | Long. (o) | -81.036 | Alt. (m) | Depth (m) | 2500 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001280 | Metagenome / Metatranscriptome | 732 | Y |
F026561 | Metagenome / Metatranscriptome | 197 | Y |
F045752 | Metagenome / Metatranscriptome | 152 | Y |
F105019 | Metagenome / Metatranscriptome | 100 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209599_100237832 | F045752 | AGGA | MADPTQTPSRGDWLCPCSGCTKSISAERKQLIEILLIKKAEYLIYRGSSFDAEGNLMWAKDDAQAYADGIDMVINLIEDRMPKTKGKK |
Ga0209599_100237835 | F026561 | GGA | MASPVNPTPAGAVTSEEATRKNPKQGFRSGLKVDKNRHGIRRETSLGPKPPKKTRPKKV |
Ga0209599_100237836 | F001280 | AGG | MCIECGCEALGSEAGIVNIPGGILDVSRDGDSGLTLNMTSTPEQTRQFINER |
Ga0209599_100237838 | F105019 | N/A | AKALEIRKANHKGPGGKVPGSMNKKKTGYRGVKSNTAK |
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