Scaffold Ga0209599_10017818

Overview

Basic Information

• Taxon OID: 3300027710
• Scaffold ID: Ga0209599_10017818
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2036
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015209	Metagenome	256	N
F015472	Metagenome	254	Y
F056602	Metagenome	137	N
F074878	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209599_100178181	F015209	N/A	MIPTKYERNLMNSYRHKALSLWSALLAEERWHKFESTNCKPSCKGWNGWAPYCECFENHCTFVPKGDIEDMELVIIAKPIDEVLRNIQVIP
Ga0209599_100178182	F056602	AGGTGG	MSNWTKGFICVAIASQAFLFVILFGCKLGDAFYISGVDLFGMVMSSVCSLVYIPAILVSYDSDQVRKKLNEQLQA
Ga0209599_100178183	F015472	AGG	MAHFYLNQGGTRWYSDGMVQVTGVYKDKVYDRMRQPMFWESFGNFALCYVRVGRTVFCGFTEDNNGVIQLNLGKCKVVR
Ga0209599_100178184	F074878	N/A	MNTTDKVIVKFRFRTPRMVYSVYFNGMLLASGYDAQQLGEDYARKYGVEWLLQDGDKFYSQKGLVK