Scaffold Ga0209599_10014462

Overview

Basic Information

• Taxon OID: 3300027710
• Scaffold ID: Ga0209599_10014462
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2320
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007263	Metagenome / Metatranscriptome	354	Y
F014849	Metagenome / Metatranscriptome	259	Y
F017133	Metagenome / Metatranscriptome	242	Y
F045756	Metagenome	152	Y
F048982	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209599_100144621	F014849	GAGG	MILDNGTLLAIIIALVGSLGVMLAFWKQNVQLTKENNRLRIQLREERRKIR
Ga0209599_100144624	F007263	AGG	MINTYLDENQFYFIKDEQHLCCDELQFKYVCKAHGETMGCYYCEFDYSQECEC
Ga0209599_100144626	F048982	AGGAG	MTIELRDVLSTCRQIRGNDRDSGTHYLLGYLWANTSDKEKMRIAKLFADDLAELGNDNE
Ga0209599_100144627	F017133	AGGAG	MSIWTKFPTVNNYPQGMMNLCPCGQVVLAPALYHEGFPWWENPNQCKELFEGVN
Ga0209599_100144628	F045756	AGGA	MTKYNVLISYVVEAEDEMRAVFALNKSLMPLSETELAKFDAFLVEESQ