NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209599_10014128

Scaffold Ga0209599_10014128


Overview

Basic Information
Taxon OID3300027710 Open in IMG/M
Scaffold IDGa0209599_10014128 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2357
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003066Metagenome / Metatranscriptome509Y
F011384Metagenome / Metatranscriptome291Y
F024784Metagenome204Y

Sequences

Protein IDFamilyRBSSequence
Ga0209599_100141286F024784GGAGMGRAEKVLDVVVWLLIVGGMGWFAYGCYELIDLFFLRG
Ga0209599_100141287F011384GGAGMYTKLDDQRQAKFVINYITAHPGCSIKQIVQECVISRSRLKYLESQEYLILPKWTYSNELDKRFKNRKYVSVTVGREYGKWDEQKRY
Ga0209599_100141289F003066AGGAMAKKEPVAWLYEEFDIRSGDLKASYLWSFHPKELSYLNDLKGSTHHIKITPLFRGEKIEEYKSMNKYSEETQRLIESNNGL

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