Scaffold Ga0209599_10013537

Overview

Basic Information

• Taxon OID: 3300027710
• Scaffold ID: Ga0209599_10013537
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2421
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002406	Metagenome	562	Y
F006182	Metagenome	379	Y
F010618	Metagenome	301	N
F103230	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209599_100135371	F103230	GGA	MIPFFLILSSLNPINNFVSLKTYISENAQVHCYVYFINEDIPDYPRVNVIEKSK
Ga0209599_100135373	F002406	N/A	MENIKWIRAMSDRLRDELSKEYDDETKDLIVRAFMRGLYQDPSIVEELKSSSLIEGDYFEDED
Ga0209599_100135374	F010618	AGGAG	MTLKELIAKLQELDKKYEQYSQDTEVVLAIHSKNEFNPEVQVDYIDEILHPALDTFSGYICRIVLCGEIEWED
Ga0209599_100135376	F006182	AGGA	MKVNFNITGTMEIPDSVIPHYDVAGKLYALEFNDIIYMLQICIVAEGGAWGNEIITHQQDMENHSIKNVRYNDAEFELSDII