Scaffold Ga0209599_10011985

Overview

Basic Information

• Taxon OID: 3300027710
• Scaffold ID: Ga0209599_10011985
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2612
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006060	Metagenome / Metatranscriptome	382	Y
F034813	Metagenome	173	Y
F083677	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209599_100119852	F006060	AGGAG	MLKFENVATVGDIIRAYDFKPCAGRDDAFIEGIVIDANNNESGFSSFKVEVTVDKFKKYETKANPRNRVGAIMYVPHQTSFMEFDFRVINLSKV
Ga0209599_100119856	F083677	AGGAG	MANNHFDGMDVDELQSYYSDFHKDYYGFRPRSATPEQWRSRDWLIESINGIHDAFDAMKKTAEGREQLRAEGWRIDESEFV
Ga0209599_100119857	F034813	GAG	MSYDSDYESVYMVVFDSGRTIHVQFFDVEEVKEYCADHHAGDSIKSIYKEVYCNFAEVE