Scaffold Ga0209599_10010225

Overview

Basic Information

• Taxon OID: 3300027710
• Scaffold ID: Ga0209599_10010225
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2893
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007525	Metagenome / Metatranscriptome	349	Y
F043404	Metagenome	156	Y
F070119	Metagenome	123	N
F082675	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209599_1001022511	F043404	AGGA	MIDTTDPILNELAEHFVELHGVGGIELEQWETAYKFVKHFYHTEEMVQIVIREKKV
Ga0209599_100102253	F070119	GGAGG	MNLNSYSVSDFVLPNFLEPGDIIQWEEEIYTVKNFDLLSDGFIIYATDEMEDDVELLIPDNVIISLMEEQ
Ga0209599_100102255	F007525	AGTAGG	MKTLEGVTVEYTQTIPTSKQMPEFYVWQEGYESYATITYLDRVVEIERGGEMHLTIPNLVNGELTDEYGVIVRYSDDLEAAGINDDIQLMQFIKTISNAGFEVYRMNPWWELFAHNDDMGEVYETFYEAVDAGIDYILDDKGWD
Ga0209599_100102256	F082675	AGGAG	MSKQYHWVVVYDEDWGAFMVDAEGELLDRDRLLYNKESGKWEYLEEDTEQEAEYYRLEEILAYNITRLDLTKKV