NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209599_10009374

Scaffold Ga0209599_10009374


Overview

Basic Information
Taxon OID3300027710 Open in IMG/M
Scaffold IDGa0209599_10009374 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3066
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001561Metagenome / Metatranscriptome670Y
F060908Metagenome / Metatranscriptome132Y
F078705Metagenome116N
F093349Metagenome106N
F093847Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0209599_100093741F093349N/ALLMADIKKSAHNKNHSLENFTVDSQVKFSSKCKICKKTVTVDMEAELPVSGEVLFIDCQKPERKKKIQISS
Ga0209599_100093744F001561N/AMKRKQKMQTSEQKIKLLKKTIETLWHGVSDTREGDYPRIISLYKEVLMHDYHDADSWENMVWLMWSMAINKKDTVWLFQAEKFAKRYLSLNPNGYRAFEYVGQFYRIMMVDERLAIRYYESALRWKDAPETTFHSLTSLYIKNGDKIRAIGNCRFNLTRYPNDPYAKSKLKELTK
Ga0209599_100093746F078705N/AMYIAVDAIAIEDDPKLSYLLFPYDEDLLEAIEENLKEIRVEDEIIFSLDDVLLIRGEFHYVRKKVTMTDISEHRFSLGHNTESIPILENSKLHVANDYFYFSGYRKGTKNDKSNLKYVSGNFNLITIEKLRKYVKSKRDMVE
Ga0209599_100093747F093847AGAAGMVFLLQSPKDSTLTINLRKTFARVVYYIEQTNQGKSKETILKELELSEEEFQFLLNTMLSISKLKDNEATISSIQIKEEIFIGGIYLTVHNKDLISL
Ga0209599_100093749F060908N/AMTRKLDYTVSESIKTQSKNRIQIPKKYASYIGLKEKFVAHVTNLNGSYVISACPTPESKKYMVDKDGAIRFPVQKNEYKIMIADSVVVIL
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