Scaffold Ga0209599_10007716

Overview

Basic Information

• Taxon OID: 3300027710
• Scaffold ID: Ga0209599_10007716
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3483
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (53.85%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000441	Metagenome / Metatranscriptome	1136	Y
F038246	Metagenome	166	Y
F050377	Metagenome / Metatranscriptome	145	Y
F085700	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209599_100077162	F000441	AGGAGG	MRMSDAYINDQLNKAQKLLWGGSETENIEAHNIIAKLIKDRVEQVEQ
Ga0209599_100077164	F050377	AGGA	MTTSTTTREYLKAQGIAVGKRGRFSAAALGVISKAEKEGVVFTDKKLAK
Ga0209599_100077165	F085700	AGGCGG	MAKANEFKAAEKLTDYLNNANFSPAVMANVLTTEHTLHTQDRLMELVRYIIQYNALRLKSEWDKGYTSEGLLMADALNDMLEAKYGAVDRNLTIDSLKETRVREPQYLMDLDSF
Ga0209599_100077168	F038246	N/A	MGILDNFEAYVEWAENQKTEKCHYCQAIATYNDLAEVDRNYQVVGVCACHSFKGLSS