Scaffold Ga0209599_10006429

Overview

Basic Information

• Taxon OID: 3300027710
• Scaffold ID: Ga0209599_10006429
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3949
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003542	Metagenome / Metatranscriptome	480	Y
F005630	Metagenome / Metatranscriptome	394	N
F011392	Metagenome / Metatranscriptome	291	Y
F029655	Metagenome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209599_100064293	F003542	N/A	MSKVNFDYDLFESKIGYDSVNKQYLIRVYDYLVSEMNNNPAPKWVGIMRMMLGSNPKGVNPSSYYSSVRRCLKEIDVCKFDSVKRCMVKGRNWDRFVSDESWDWFIMRTGSCEYSTIIK
Ga0209599_100064294	F029655	N/A	MNKLVFKVNEKACVDFLKKYPMVCNLMENSNGKDLISAYRKFLKLKDMNESKLGGRGETIGSVSFDTKTFYKYDWDVCTGWAEVFQYYKSKSKK
Ga0209599_100064295	F011392	N/A	MFVRDGLRYFNIIKVKVKNKNMNLSIKELNELIYSLGIASHNGRFVNKDVNESLLERMYGELNAKIAEEAIDEEIEYSSHFVSNDAADEDYRSTLIQDSNRYDDSHMVTSFPIVDPFTSVSEDYDNHLSKLKTRGYITQALLDFVDRKGAVSYGELETYYKQITGGSNSFSHILDNLRTPYKNRKTQRYIAKEGKRYSDAKYIIKVANSSNWVVADCR
Ga0209599_100064296	F005630	N/A	MNLYEVNGFYGSRNRGTILVYETNSGKRWYCVEGSCNINCTYDEINEGCDVERLSDFDTMSSRDGIYLVRDLYDFVIS