Scaffold Ga0209599_10004230

Overview

Basic Information

• Taxon OID: 3300027710
• Scaffold ID: Ga0209599_10004230
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5276
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006587	Metagenome	369	Y
F023292	Metagenome	210	Y
F038087	Metagenome	166	Y
F051701	Metagenome	143	Y
F061801	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209599_100042303	F006587	AGGAGG	MDKKYEGTGFVVVGFIVGCCLMWAVMQSIHVQKKYSMNLKCVQGELYEEIRPNFYIKSHLECFEQRTL
Ga0209599_100042304	F051701	AGGAG	MQVLIELNDDQADEVLVESLKSGYEINLNFPDEPNFYEINQAFRTLLAYYMGDKEYAKYMHKRAKVRKNHNAKRIADAYSGL
Ga0209599_100042306	F038087	AGGAG	MSNKITIVLSINSDSVSRFLFDDYINACNDAGLMVRYEPYTKDMYAELNAKALDIEKQDALASLEEEILNNKACFNGSCED
Ga0209599_100042308	F023292	N/A	MNIKQVKEYVTNQLKSYKVTSIMKDWSDSDWKHMYNQISPTKPHEVERRLIDWARHELDFFRQALYKERHYEELLIDHACIDCLKCEDVSLAERKYYVRRPQS
Ga0209599_100042309	F061801	GGAG	MKTKPIFKTQATPSYKGYDREIYMSEYTPINKEHYRRLRFCTVVSVGINVFLLLVMVLR