Scaffold Ga0209599_10004142

Overview

Basic Information

• Taxon OID: 3300027710
• Scaffold ID: Ga0209599_10004142
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5359
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (85.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000808	Metagenome / Metatranscriptome	882	Y
F017484	Metagenome / Metatranscriptome	240	Y
F048982	Metagenome / Metatranscriptome	147	Y
F093237	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209599_1000414213	F093237	GAG	MTYKYNLGDTATMSNQELLNALLAKEVAPRTIVGTGYKNGRQVAIDYLKEMIAKENEVK
Ga0209599_1000414220	F000808	AGAAGG	MEYNYSITFSYDGELFSTMRTADLMEAVDVWNKCVDFGDAKEYATYNLSDPTGKMYTKTFYRNGNVSVK
Ga0209599_100041424	F017484	GGAG	MSNVEIFRLNEQGAGWVSLNDATTAELLDLELAITFNAPMQMLCFKCHTPIPKGNVCVNHKDVKGAIYFG
Ga0209599_100041428	F048982	AGGGGG	MISTELQDVLKVVYQIRGNDRHSGAHYLLGYLWANTPEKEKKRIAKLFSDDLAELGNDNE