Scaffold Ga0209599_10003963

Overview

Basic Information

• Taxon OID: 3300027710
• Scaffold ID: Ga0209599_10003963
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5519
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023848	Metagenome	208	Y
F026558	Metagenome	197	Y
F042895	Metagenome	157	Y
F079592	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209599_100039631	F026558	GAG	MKTKADLLKRNPIYSSIYNEMLAYQYAYLGGLPFKMFVRKKRPSEDSTLYQDLVANTIAQPICRYIVDTINDVLFEPGIKRNMQFCTPTGAKIDPRNTEWADLFLLDADLTNRSMNGFMEGVGDLTSIYGHCWVAVDMPQQGQGDLGRPYVCAINPLNVWDWEFDYYGGRPMLKYVKVMEMEEEDCYYIKCYHLGDATTPSYWESYEVEKGPSKQEEPAELTGSGKYPAGMSLPIFIAYGRRDPRTIDLGISDIDAASDGMREYYKLECEKYTALQFAHTLIRADKGISIPVHAGAIVRANEGQIEAIPIDTGDVDAIIKTQQDLLEQIEALTGLGGLRNSKNQIASGVAIIEERKQLHRLAKSKARLMEVTEEMIYTFAARFMNVRWAGEVSYNTDYEAHDTNYRMAVMKSAKELVGDNSMVQSLITKEIIAMLAPDTAIPEYEEAYINTIADPDLRTLMTEQNNQVLSRDLEPSMIPTHEMYGEEGDEESGKEEAEYDNEVGDADNTSILGGAGTPVTNIGMTYYTQQVAPVVLQGMNTGR
Ga0209599_100039633	F023848	GGA	MRNVNIPLYGEQKTILADWLTTNKHCIDIVPVGSGKTFLAAIALPIFASDPQFHRGKDIIYSAPTGAMIKSLIWEPLKKSCIEYFGLVDGKDINNSELTIRFPNGTFIRCKSAEQRENLRGLNVGMWIADEAALYTQDTLQEITNRLRPKVGQPETAGRLIVISTPNGTGPLHDLFQLAKSNPEKYVVRHYNYLEMRSGNKNFIEEQRRIISPLKFGQDYMCQWESVADMFYYSWDKNKYCREVKDFGGDLYTFHDFNKRVMCATVAQVKKPGDLNGSIEILKSYAIPDCSTEGIASAIREDFPKRRINSIIDMSGTQVNRDTTSPFGVTDKIILEKYGFTIVNTRKSNPLITDTDNTSNAFIARGGLVVKPDDKFLLEALQTYHFEDASRKRLVKYTEQKYAHIDGLGDCIRYGIHHLFPITHNSVGIPEYVGMDPRLSNRARPGTEHMPDSPLYPGGPTWEEIINGEQVEDYQVWS
Ga0209599_100039638	F042895	AGGA	MQQLIDKPMYVGHIRNFDKMVTELSPFMTEIEIDQCISFMHTLVDTKNDINPSPEDCKTQLQIMFGRDRFLELTKAWGEKNQKFLSVFGTLKYRLKSDGSYWDGLDETDNEEDYEKVYI
Ga0209599_100039639	F079592	AGGA	MTQEIEYTYKLYRDNEQQLVVTVDPLVKDIEVSLEKMMEMNIDELSDDNKYAFEMKLMGLRTIHQFLGALQQENYLKEYKAGLTTELKGKINIDVQERLDGLTKDTVH