NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209599_10003630

Scaffold Ga0209599_10003630


Overview

Basic Information
Taxon OID3300027710 Open in IMG/M
Scaffold IDGa0209599_10003630 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5858
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (90.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005558Metagenome396Y
F007691Metagenome / Metatranscriptome346Y
F013279Metagenome / Metatranscriptome272Y
F023834Metagenome208Y
F031792Metagenome181Y
F093528Metagenome106Y
F095162Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0209599_1000363010F007691AGAAGGMETINQLVNEIYEDNYSHIEFDDNMGGDCDCHIHTTLKTIVKYWHEGEGE
Ga0209599_1000363011F005558AGGAGMDQDTMYWSEIAQLTHTTQVERFNWCWCEDNEGNENPYSDCPKEGK
Ga0209599_1000363012F093528AGGAGGMNEETTTTHVVTVVIQTGSKWNKVELFDFSGGEPTPLASGEGSNWRTALGEALSKISLSSDTPEKSVNDVVKEIQEEAGE
Ga0209599_1000363013F031792AGGAGGMGYEPELNDPIFYAEEKEEEIKCFSCSDTLDQDDIVWADEEGQIGKEGNDSAWCVSCLPSEKEGES
Ga0209599_1000363014F023834AGGAGGMNKEYWQAKAELCRDLALIQIEDEDTEKEAGMNLMRMTYALSMVEAYSDGTGE
Ga0209599_1000363016F095162GGAGGMENEKRLASAAKQAVYYRNYRRARDRALVKLAQAYPEAYKELLEKEKVSDEQEGKTWIDLDGSTISPRITARAKARGITLTQTNTDQGNNGGEA
Ga0209599_1000363018F013279AGGCGGMQYDYRCPDCNTELTIERSIHEEPREPSCFDCHIPMIRKWDSPAITFKGKGFYTTDK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.