Scaffold Ga0209599

Basic Information
Taxon OID	3300027710 Open in IMG/M
Scaffold ID	Ga0209599_10003090 Open in IMG/M
Source Dataset Name	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027710 Open in IMG/M

Scaffold ID

Ga0209599_10003090 Open in IMG/M

Source Dataset Name

Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6532
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (5.88%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (14.29%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

6532

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (5.88%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (14.29%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	Ohio, USA
Coordinates	Lat. (^o)	39.849	Long. (^o)	-81.036	Alt. (m)	Depth (m)	2500
Location on Map

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Source Dataset Sampling Location

Location Name

Ohio, USA

Coordinates

Lat. (^o)

39.849

Long. (^o)

-81.036

Alt. (m)

Depth (m)

2500

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001754	Metagenome / Metatranscriptome	641	Y
F003291	Metagenome / Metatranscriptome	495	Y
F005389	Metagenome / Metatranscriptome	402	Y
F011934	Metagenome / Metatranscriptome	285	Y
F017998	Metagenome	237	Y
F031098	Metagenome / Metatranscriptome	183	N
F037728	Metagenome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209599_1000309012	F005389	N/A	MANKSKKAAKRGNIYETVSNNIQKITRPSGTVSYRVRVSEDGVMYSQYETSLKKAKTLRNSWVG
Ga0209599_1000309017	F011934	N/A	WDTKEESLGWYDWNNIIWINLAQCKRMISVQKTILHEWTHAQQTFRWYNHYQIKYGYKNNPYEIEARENEKLVKRAYKKQK
Ga0209599_100030902	F017998	N/A	MNLERLDLEKYEVLEQERNNTIADPLYQQWMKGLGVSSSYWDREGIIRANDINNQYDYSNLNGNKSAKTGIVYSVISLFK
Ga0209599_100030903	F037728	N/A	MKRLEIKNFVKEMDNIDSDFFGVRYCSNGVDRYIIGIDTNDVVSFRPLKPKHYKMSIDKLPNEDGNYHIWLWDMESNISYPMSVDRNSLSNSSEFTKYLNHTLKLADEGQFSGSDGCMIK
Ga0209599_100030905	F031098	AGTAG	MKTYYDIAIHTPSKDVIKIKGVSYSQMMKIANDNPNLEKIEILKEYEKKTYR
Ga0209599_100030908	F003291	N/A	MSTNQINEKLVSVFNQDELAALMTAMAGYINVKRKQGRATGIESVVFNKVTDALLLSNYMNATVVDRGNGRMGVAEYKMSEAQYDAMYESDVRAHS
Ga0209599_100030909	F001754	N/A	MNTIYNNFAASKMSNNPRFEVVVSFKDFMGKTHNIVCNNRRKLAEANEFLKMFKTESVKIAQILGEYPVVMGMYPKKYHSEIKRELASAGFSAVSKFLLK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209599_10003090

Overview

Ecosystem & Geography

Associated Families

Sequences