Basic Information | |
---|---|
Taxon OID | 3300027710 Open in IMG/M |
Scaffold ID | Ga0209599_10003090 Open in IMG/M |
Source Dataset Name | Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 6532 |
Total Scaffold Genes | 17 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (5.88%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (14.29%) |
Associated Families | 7 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Ohio, USA | |||||||
Coordinates | Lat. (o) | 39.849 | Long. (o) | -81.036 | Alt. (m) | Depth (m) | 2500 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001754 | Metagenome / Metatranscriptome | 641 | Y |
F003291 | Metagenome / Metatranscriptome | 495 | Y |
F005389 | Metagenome / Metatranscriptome | 402 | Y |
F011934 | Metagenome / Metatranscriptome | 285 | Y |
F017998 | Metagenome | 237 | Y |
F031098 | Metagenome / Metatranscriptome | 183 | N |
F037728 | Metagenome | 167 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209599_1000309012 | F005389 | N/A | MANKSKKAAKRGNIYETVSNNIQKITRPSGTVSYRVRVSEDGVMYSQYETSLKKAKTLRNSWVG |
Ga0209599_1000309017 | F011934 | N/A | WDTKEESLGWYDWNNIIWINLAQCKRMISVQKTILHEWTHAQQTFRWYNHYQIKYGYKNNPYEIEARENEKLVKRAYKKQK |
Ga0209599_100030902 | F017998 | N/A | MNLERLDLEKYEVLEQERNNTIADPLYQQWMKGLGVSSSYWDREGIIRANDINNQYDYSNLNGNKSAKTGIVYSVISLFK |
Ga0209599_100030903 | F037728 | N/A | MKRLEIKNFVKEMDNIDSDFFGVRYCSNGVDRYIIGIDTNDVVSFRPLKPKHYKMSIDKLPNEDGNYHIWLWDMESNISYPMSVDRNSLSNSSEFTKYLNHTLKLADEGQFSGSDGCMIK |
Ga0209599_100030905 | F031098 | AGTAG | MKTYYDIAIHTPSKDVIKIKGVSYSQMMKIANDNPNLEKIEILKEYEKKTYR |
Ga0209599_100030908 | F003291 | N/A | MSTNQINEKLVSVFNQDELAALMTAMAGYINVKRKQGRATGIESVVFNKVTDALLLSNYMNATVVDRGNGRMGVAEYKMSEAQYDAMYESDVRAHS |
Ga0209599_100030909 | F001754 | N/A | MNTIYNNFAASKMSNNPRFEVVVSFKDFMGKTHNIVCNNRRKLAEANEFLKMFKTESVKIAQILGEYPVVMGMYPKKYHSEIKRELASAGFSAVSKFLLK |
⦗Top⦘ |