NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209599_10003090

Scaffold Ga0209599_10003090


Overview

Basic Information
Taxon OID3300027710 Open in IMG/M
Scaffold IDGa0209599_10003090 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6532
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (5.88%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001754Metagenome / Metatranscriptome641Y
F003291Metagenome / Metatranscriptome495Y
F005389Metagenome / Metatranscriptome402Y
F011934Metagenome / Metatranscriptome285Y
F017998Metagenome237Y
F031098Metagenome / Metatranscriptome183N
F037728Metagenome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0209599_1000309012F005389N/AMANKSKKAAKRGNIYETVSNNIQKITRPSGTVSYRVRVSEDGVMYSQYETSLKKAKTLRNSWVG
Ga0209599_1000309017F011934N/AWDTKEESLGWYDWNNIIWINLAQCKRMISVQKTILHEWTHAQQTFRWYNHYQIKYGYKNNPYEIEARENEKLVKRAYKKQK
Ga0209599_100030902F017998N/AMNLERLDLEKYEVLEQERNNTIADPLYQQWMKGLGVSSSYWDREGIIRANDINNQYDYSNLNGNKSAKTGIVYSVISLFK
Ga0209599_100030903F037728N/AMKRLEIKNFVKEMDNIDSDFFGVRYCSNGVDRYIIGIDTNDVVSFRPLKPKHYKMSIDKLPNEDGNYHIWLWDMESNISYPMSVDRNSLSNSSEFTKYLNHTLKLADEGQFSGSDGCMIK
Ga0209599_100030905F031098AGTAGMKTYYDIAIHTPSKDVIKIKGVSYSQMMKIANDNPNLEKIEILKEYEKKTYR
Ga0209599_100030908F003291N/AMSTNQINEKLVSVFNQDELAALMTAMAGYINVKRKQGRATGIESVVFNKVTDALLLSNYMNATVVDRGNGRMGVAEYKMSEAQYDAMYESDVRAHS
Ga0209599_100030909F001754N/AMNTIYNNFAASKMSNNPRFEVVVSFKDFMGKTHNIVCNNRRKLAEANEFLKMFKTESVKIAQILGEYPVVMGMYPKKYHSEIKRELASAGFSAVSKFLLK

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