Scaffold Ga0209599_10002847

Overview

Basic Information

• Taxon OID: 3300027710
• Scaffold ID: Ga0209599_10002847
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6910
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006660	Metagenome	367	Y
F023109	Metagenome / Metatranscriptome	211	Y
F043944	Metagenome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209599_100028472	F023109	N/A	MIRQATRYDIPRLLEIVEAYAKENTITKLGDSNNHFPKYVEELLFGILQGKGFIYIDNHMRGAIIAIKQNNIWSPKVRELHELLWWVEPEHRNGTLGGRLWKEFDAHAKKMLEIGSVDLIYTSISANGPLIDYTRRGYKPVGATFVRE
Ga0209599_100028474	F006660	GGAG	MSFQTIFEIQQSMTVQNRRTVGQQYSRSGQVRVAQYLTSVPWVFVVEPHSYLYYPQVRNVIQAIDNKDRQLPETISFASNNLSWFVRYQGDLSTLQQAALTLASLPAANSQTITVGNLPSISSSAYIFKAGDFLQLGIYPYKVTADVPRGSGSTVTVSLHRPVIGTPTVGPLSGIGIGCSFFMLAERCPTYTLTPAPNGAFVQWDEPFVFREDITG
Ga0209599_100028476	F043944	N/A	MVFNGHTLDTVAEIDDITMANIQTMYADGLIGNYGLLTQIASLTNGVFNYMRPPNSPTYKLANILGNAYDYIYPPLSEEQKKAAVNDSLIGFMSQAQGFNKTKFGVKNG